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Update R4-to-R5 update script and related upgrade guide doc

Kurt Garloff requested to merge update_r4_r5_script into main

Created by: matofeder

This PR updates the following:

  • updates update_R4_to_R5.sh script with respect to the current main (potential release candidate for R5)
  • updates doc/Upgrade-Guide.md with respect to the discussion from today's team container meeting (sep-7)

Fixes #521 (closed)

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